|
This code may be freely used for all non-commercial
purposes. Trio Phasing: Frequently case/control genotype data represents family trios consisting of two parents and one offspring. The trio phasing project develops a satisfactory method for phasing family trio data. Disease Association: This project explores disease susceptibility prediction on genotype/haplotype data. 2SNP: SCALABLE PHASING METHOD BASED ON 2-SNP HAPLOTYPES. New phasing is based on statistically significant LD and deviation from Hardy-Weinberg equilibrium. On datasets across 69 regions from HapMap 2SNP is 3-4 orders of magnitude faster and usually outperforms HAPLOTYPER, GERBIL and matches PHASE. Tagging: Tag Selection based on SNP Multivariate Linear Regression. DACS: Disease Association Combinatorial Search software searches for statistically significant multi-SNP combinations associated with a disease. Dr. Alex Zelikovsky Acknowledgment This website is partially supported by National Science Foundation under Grant No. 0429735. |