|
This code may be freely used for all non-commercial
purposes. Trio Phasing: Frequently case/control genotype data represents family trios consisting of two parents and one offspring. The trio phasing project develops a satisfactory method for phasing family trio data. Disease Association: This project explores disease susceptibility prediction on genotype/haplotype data. 2SNP: SCALABLE PHASING METHOD BASED ON 2-SNP HAPLOTYPES. New phasing is based on statistically significant LD and deviation from Hardy-Weinberg equilibrium. On datasets across 69 regions from HapMap 2SNP is 3-4 orders of magnitude faster and usually outperforms HAPLOTYPER, GERBIL and matches PHASE. Tagging: Tag Selection based on SNP Multivariate Linear Regression. DACS: Disease
Association Combinatorial Search software searches for statistically
significant multi-SNP combinations associated with a disease. MetNetAligner:
Web service tool for ·
matching metabolic pathways/networks ·
identifying pathway holes
(missing enzymes) and
suggesting plausible candidates ·
and finding network motifs ViSpA: Viral Spectrum Assembler implements a novel viral assembling and frequency estimation methods. This software uses a simple error correction, viral variants assembling based on maximum-bandwidth paths in weighted read graphs and frequency estimation via Expectation Maximization on all reads. Dr. Alex Zelikovsky Acknowledgment This website is partially supported by National Science Foundation under Grant No. 0429735. |
|
|
|
|