This code may be freely used for all non-commercial
Trio Phasing: Frequently case/control genotype data represents family trios consisting of two parents and one offspring. The trio phasing project develops a satisfactory method for phasing family trio data.
Disease Association: This project explores disease susceptibility prediction on genotype/haplotype data.
2SNP: SCALABLE PHASING METHOD BASED ON 2-SNP HAPLOTYPES. New phasing is based on statistically significant LD and deviation from Hardy-Weinberg equilibrium. On datasets across 69 regions from HapMap 2SNP is 3-4 orders of magnitude faster and usually outperforms HAPLOTYPER, GERBIL and matches PHASE.
Tagging: Tag Selection based on SNP Multivariate Linear Regression.
DACS: Disease Association Combinatorial Search software searches for statistically significant multi-SNP combinations associated with a disease.
MetNetAligner: Web service tool for
· matching metabolic pathways/networks
· identifying pathway holes (missing enzymes) and suggesting plausible candidates
· and finding network motifs
ViSpA: Viral Spectrum Assembler implements a novel viral assembling and frequency estimation methods. This software uses a simple error correction, viral variants assembling based on maximum-bandwidth paths in weighted read graphs and frequency estimation via Expectation Maximization on all reads.
This website is partially supported by National Science Foundation under Grant No. 0429735.